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The episode opens with a flashback of Desmond Hume (Henry Ian Cusick), in the Phillipines, searching for a doctor to help his wife Penny Widmore (Sonya Walger), who is giving birth to their son, Charlie. In 2007, Desmond and Penny arrive in London, where Desmond plans to look for the mother of Daniel Faraday (Jeremy Davies), who is believed to be at Oxford University. However, the school has no record of either Faraday, even though Daniel was a professor there. Desmond searches Faraday's lab and meets a janitor who tells him that Faraday conducted experiments on a woman and provides an address for her. At her house, Desmond finds that the woman is in a vegetative state after experiencing temporal disassociation, similar to Desmond's experiences on the freighter (as seen in "The Constant"). He learns that Penny's father, Charles Widmore (Alan Dale), is not only paying her medical expenses, but also funded Daniel's research. Desmond confronts Widmore, who gives him the address of Daniel's mother in Los Angeles. Desmond returns to Penny, who agrees that they must travel to Los Angeles.

On the island, the remaining survivors are back in the past, attempting to start a fire, when they are attacked by a barrage of flaming arrows. Most of the survivors are able to escape; however, Neil "Frogurt" (Sean Whalen) and a few others are killed, and James "Sawyer" Ford (Josh Holloway) and Juliet Burke (Elizabeth Mitchell) are separated from the group. Lost in the jungle, they are captured by a group of armed military men who demand to know who they are, asserting that the island is theirs. The men are about to cut off Juliet's hand to extract information, when John Locke (Terry O'Quinn) ambushes them, helping Sawyer and Juliet free themselves.

The episode begins in the late 1970s, when the Dharma Initiative has begun to build stations on the island. Dr. Pierre Chang (François Chau) begins to film the orientation film for the Arrow Station, when he is informed of an incident at the construction site of the Orchid Station. Upon arriving there, he realizes that the workers have found the "unlimited" energy source that the Dharma Initiative has been looking for, which will enable them to manipulate time. As he leaves the station, he bumps into Daniel Faraday (Jeremy Davies), who is dressed as a Dharma construction worker.